Paket: r-bioc-isoformswitchanalyzer (2.4.0+ds-1)

[ Quellcode: r-bioc-isoformswitchanalyzer  ]

Identify, Annotate and Visualize Alternative Splicing and

Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data. Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

Andere Pakete mit Bezug zu r-bioc-isoformswitchanalyzer

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.19

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-bioc-biobase (>= 2.64.0)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel (>= 1.38.0)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome (>= 1.72.0)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-dexseq (>= 1.50.0)

  GNU R inference of differential exon usage in RNA-Seq

• dep: r-bioc-edger (>= 4.2.0)

  Empirische Analyse von digitalen Genexpressionsdaten mit R

• dep: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-limma (>= 3.60.3)

  linear models for microarray data

• dep: r-bioc-pfamanalyzer (>= 1.4.0)

  GNU R identification of domain isotypes in pfam data

• dep: r-bioc-pwalign (>= 1.0.0-2~0exp1)

  Perform pairwise sequence alignments

• dep: r-bioc-rtracklayer (>= 1.64.0)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-saturn (>= 1.12.0)

  scalable analysis of differential transcript usage for RNA-sequencing

• dep: r-bioc-summarizedexperiment (>= 1.34.0)

  BioConductor assay container

• dep: r-bioc-sva (>= 3.52.0)

  GNU R Surrogate Variable Analysis

• dep: r-bioc-tximeta (>= 1.22.1)

  Transcript Quantification Import with Automatic Metadata

• dep: r-bioc-tximport (>= 1.32.0)

  transcript-level estimates for biological sequencing

• dep: r-bioc-xvector (>= 0.44.0)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-dbi

  GNU-R-Paket, stellt eine allgemeine Datenbankschnittstelle bereit

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-futile.logger

  logging utility for GNU R

• dep: r-cran-ggplot2 (>= 3.3.5)

  Implementierung der »Grammar of Graphics«

• dep: r-cran-gridextra

  GNU R: Erweiterungen für das grid-Paket

• dep: r-cran-magrittr

  GNU R forward-pipe operator

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcurl

  GNU R General network (HTTP/FTP/...) client interface

• dep: r-cran-readr

  GNU R package to read rectangular text data

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-stringr

  Erleichtert die Arbeit mit Strings

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-tidyr

  GNU R package to easily tidy data

• dep: r-cran-venndiagram

  Generate High-Resolution Venn and Euler Plots

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

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Architektur	Paketgröße	Größe (installiert)	Dateien
mips64el	4.018,4 kB	4.770,0 kB	[Liste der Dateien]