Paket: multiqc (1.21+dfsg-2)
Links für multiqc
Debian-Ressourcen:
Quellcode-Paket multiqc herunterladen:
- [multiqc_1.21+dfsg-2.dsc]
- [multiqc_1.21+dfsg.orig-debian-tests-data.tar.xz]
- [multiqc_1.21+dfsg.orig.tar.xz]
- [multiqc_1.21+dfsg-2.debian.tar.xz]
Betreuer:
- Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
- Andreas Tille (QS-Seite)
- Steffen Moeller (QS-Seite)
Externe Ressourcen:
- Homepage [multiqc.info]
Ähnliche Pakete:
output integration for RNA sequencing across tools and samples
The sequencing of DNA or RNA with current high-throughput technologies involves an array of tools and these are applied over a range of samples. It is easy to loose oversight. And gathering the data and forwarding them in a readable manner to the individuals who took the samples is a challenge for a tool in itself. Well. Here it is. MultiQC aggregates the output of multiple tools into a single report.
Reports are generated by scanning given directories for recognised log files. These are parsed and a single HTML report is generated summarising the statistics for all logs found. MultiQC reports can describe multiple analysis steps and large numbers of samples within a single plot, and multiple analysis tools making it ideal for routine fast quality control.
Andere Pakete mit Bezug zu multiqc
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- dep: fonts-glyphicons-halflings
- Symbole für kleinere Grafiken
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- dep: libjs-bootstrap
- HTML-, CSS- und JavaScript-Rahmenwerk
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- dep: libjs-jquery
- JavaScript-Bibliothek für dynamische Webanwendungen
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- dep: libjs-jquery-tablesorter
- jQuery-Plungin für flexible clientseitige Sortierung von Tabellen
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- dep: libjs-jquery-ui
- JavaScript-Bibliothek für Benutzerschnittstellen dynamischer Web-Anwendungen
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-click
- Command-Line Interface Creation Kit - Python 3.x
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- dep: python3-coloredlogs
- colored terminal output for Python 3's logging module
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- dep: python3-humanfriendly
- Python3 library to make user friendly text interfaces
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- dep: python3-humanize
- Python Humanize library (Python 3)
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- dep: python3-importlib-metadata
- Bibliothek für den Zugriff auf die Metadaten eines Python-Pakets - Python 3.x
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- dep: python3-jinja2
- Eigenständiges, kleines, aber schnelles und einfach bedienbares Vorlagenprogramm
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- dep: python3-lzstring
- LZ-based compression algorithm for Python (Python 3 version)
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- dep: python3-markdown
- Werkzeug zur Umwandlung von Text in HTML (Python-3-Implementierung)
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- dep: python3-matplotlib
- Python-System ähnlich Matlab zur Ausgabe von Zeichnungen
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- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
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- dep: python3-packaging
- Kern-Dienstprogramme für Python3-Pakete
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- dep: python3-pil
- Python3-Bildbearbeitungsbibliothek
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- dep: python3-plotly
- Python 3 plotting library for publication-quality graphs
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- dep: python3-pyaml-env
- Python3 YAML configuration with environment variables parsing
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- dep: python3-requests
- Elegante und einfache Python-3-HTTP-Bibliothek, für Menschen gebaut
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- dep: python3-rich
- render rich text, tables, progress bars, syntax highlighting, markdown and more
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- dep: python3-rich-click
- creating beautiful command line interfaces for Python3
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- dep: python3-spectra
- Easy color scales and color conversion for Python (Python 3 version)
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- dep: python3-yaml
- Python3-Parser und -Emitter für YAML
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- rec: libjs-filesaver
- Client-side, HTML5 library for saving local files
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- rec: node-clipboard
- Node.js module to copy to clipboard without flash
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- rec: pandoc
- general markup converter
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- rec: texlive-xetex
- TeX Live: XeTeX and packages
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- enh: adapterremoval
- rapid adapter trimming, identification, and read merging of gene sequences
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- enh: afterqc
- Paket nicht verfügbar
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- enh: bamtools
- toolkit for manipulating BAM (genome alignment) files
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- enh: bbmap
- BBTools genomic aligner and other tools for short sequences
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- enh: bcftools
- Aufruf und Manipulation genomischer Varianten von VCF/BCF-Dateien
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- enh: bcl2fastq
- Paket nicht verfügbar
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- enh: biobambam2
- tools for early stage alignment file processing
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- enh: biobloomtools
- Paket nicht verfügbar
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- enh: biscuit
- Paket nicht verfügbar
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- enh: bismark
- Paket nicht verfügbar
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- enh: bowtie
- Ultraschnelles und speichersparendes Alignmentprogramm für kurze DNA-Sequenzen
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- enh: bowtie2
- Ultraschnelles und speichersparendes Alignmentprogramm für kurze DNA-Sequenzen
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- enh: busco
- benchmarking sets of universal single-copy orthologs
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- enh: clipandmerge
- Paket nicht verfügbar
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- enh: clusterflow
- Paket nicht verfügbar
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- enh: conpair
- Paket nicht verfügbar
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- enh: cutadapt
- Clean biological sequences from high-throughput sequencing reads
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- enh: damageprofiler
- Paket nicht verfügbar
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- enh: dedup
- Paket nicht verfügbar
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- enh: deeptools
- Paket nicht verfügbar
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- enh: disambiguate
- Paket nicht verfügbar
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- enh: dragen
- Paket nicht verfügbar
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- enh: fastp
- Ultra-fast all-in-one FASTQ preprocessor
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- enh: fastq-screen
- Paket nicht verfügbar
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- enh: fastqc
- quality control for high throughput sequence data
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- enh: featurecounts
- Paket nicht verfügbar
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- enh: fgbio
- Paket nicht verfügbar
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- enh: flash
- Fast Length Adjustment of SHort reads
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- enh: flexbar
- flexible barcode and adapter removal for sequencing platforms
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- enh: gatk
- Paket nicht verfügbar
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- enh: goleft-indexcov
- Paket nicht verfügbar
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- enh: happy
- Parser-Generator für Haskell
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- enh: hicexplorer
- Paket nicht verfügbar
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- enh: hicpro
- Paket nicht verfügbar
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- enh: hicup
- Paket nicht verfügbar
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- enh: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- enh: homer
- Paket nicht verfügbar
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- enh: htseq
- Paket nicht verfügbar
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- enh: interop
- Paket nicht verfügbar
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- enh: ivar
- functions broadly useful for viral amplicon-based sequencing
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- enh: jellyfish
- Zählt k-mere in DNA-Sequenzen
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- enh: kaiju
- Paket nicht verfügbar
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- enh: kallisto
- near-optimal RNA-Seq quantification
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- enh: kat
- Paket nicht verfügbar
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- enh: kraken
- assigning taxonomic labels to short DNA sequences
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- enh: leehom
- Paket nicht verfügbar
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- enh: longranger
- Paket nicht verfügbar
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- enh: macs2
- Paket nicht verfügbar
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- enh: malt
- sequence alignment and analysis tool to process sequencing data
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- enh: methylqa
- Paket nicht verfügbar
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- enh: minionqc
- Paket nicht verfügbar
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- enh: mirtop
- Kommentieren von micrRNAs mit einer Standard-Mirna/Isomir-Benennung
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- enh: mirtrace
- Paket nicht verfügbar
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- enh: mosdepth
- Paket nicht verfügbar
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- enh: mtnucratio
- Paket nicht verfügbar
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- enh: multivcfanalyzer
- Paket nicht verfügbar
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- enh: peddy
- Paket nicht verfügbar
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- enh: phantompeakqualtools
- Paket nicht verfügbar
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- enh: picard-tools
- Command line tools to manipulate SAM and BAM files
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- enh: preseq
- Paket nicht verfügbar
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- enh: prokka
- rapid annotation of prokaryotic genomes
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- enh: pycoqc
- computes metrics and generates Interactive QC plots
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- enh: qorts
- Paket nicht verfügbar
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- enh: qualimap
- Paket nicht verfügbar
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- enh: quast
- Paket nicht verfügbar
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- enh: rna-seqc
- Paket nicht verfügbar
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- enh: rna-star
- ultrafast universal RNA-seq aligner
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- enh: rockhopper
- system for analyzing bacterial RNA-seq data
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- enh: rsem
- RNA-Seq by Expectation-Maximization
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- enh: rseqc
- Paket nicht verfügbar
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- enh: salmon
- wicked-fast transcript quantification from RNA-seq data
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- enh: samblaster
- marks duplicates, extracts discordant/split reads
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- enh: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- enh: sargasso
- Paket nicht verfügbar
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- enh: seqyclean
- Paket nicht verfügbar
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- enh: sexdeterrmine
- Paket nicht verfügbar
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- enh: sickle
- windowed adaptive trimming tool for FASTQ files using quality
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- enh: skewer
- post-processing of high-throughput DNA sequence reads
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- enh: slamdunk
- Paket nicht verfügbar
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- enh: snpeff
- genetic variant annotation and effect prediction toolbox - tool
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- enh: snpsplit
- Paket nicht verfügbar
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- enh: somalier
- Paket nicht verfügbar
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- enh: sortmerna
- tool for filtering, mapping and OTU-picking NGS reads
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- enh: stacks
- pipeline for building loci from short-read DNA sequences
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- enh: supernova
- Paket nicht verfügbar
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- enh: theta2
- Paket nicht verfügbar
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- enh: trimmomatic
- flexible read trimming tool for Illumina NGS data
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- enh: varscan2
- Paket nicht verfügbar
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- enh: vcftools
- Collection of tools to work with VCF files
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- enh: verifybamid
- Paket nicht verfügbar
multiqc herunterladen
Architektur | Paketgröße | Größe (installiert) | Dateien |
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all | 762,7 kB | 4.027,0 kB | [Liste der Dateien] |