Paket: gasic (0.0.r19-8)

[ Quellcode: gasic  ]

genome abundance similarity correction

One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.

Andere Pakete mit Bezug zu gasic

• dep: bowtie

  Ultraschnelles und speichersparendes Alignmentprogramm für kurze DNA-Sequenzen

• dep: bowtie2

  Ultraschnelles und speichersparendes Alignmentprogramm für kurze DNA-Sequenzen

• dep: bwa

  Burrows-Wheeler Aligner

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python-3-Bibliothek für die Bioinformatik

• dep: python3-matplotlib

  Python-System ähnlich Matlab zur Ausgabe von Zeichnungen

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  Wissenschaftliche Werkzeuge für Python 3

• dep: seqan-apps

  C++ library for the analysis of biological sequences

• sug: gasic-examples

  genome abundance similarity correction (example data)

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all	20,2 kB	80,0 kB	[Liste der Dateien]