Paket: beagle (241029-1)

[ Quellcode: beagle  ]

Genotype calling, genotype phasing and imputation of ungenotyped markers

Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.

Markierungen: Feld: Biologie, Bioinformatik, Implementiert in: implemented-in::java, interface::commandline, Rolle: Programm, Zweck: Analyse

Andere Pakete mit Bezug zu beagle

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• sug: beagle-doc

  Documentation for Beagle

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