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Quellcode-Paket: snippy (4.6.0+dfsg-5)

Links für snippy

Die folgenden Binärpakete werden aus diesem Quellcode-Paket gebaut:

snippy: rapid haploid variant calling and core genome alignment
snippy-examples: rapid haploid variant calling and core genome alignment (examples)

adep: debhelper-compat (= 13)

Paket nicht verfügbar
adep: any2fasta

convert various sequence formats to FASTA
adep: bcftools

Aufruf und Manipulation genomischer Varianten von VCF/BCF-Dateien
adep: bedtools

Hilfswerkzeugsammlung zum Vergleich genomischer Merkmale
adep: bwa

Burrows-Wheeler Aligner
adep: freebayes

Bayesian haplotype-based polymorphism discovery and genotyping
adep: libbio-perl-perl

Grundlegende Perl-Module von BioPerl
adep: libvcflib-tools

C++ library for parsing and manipulating VCF files (tools)
adep: minimap2

versatile pairwise aligner for genomic and spliced nucleotide sequences
adep: parallel

build and execute command lines from standard input in parallel
adep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
adep: samclip

filter SAM file for soft and hard clipped alignments
adep: seqtk

Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
adep: snp-sites

Binary code for the package snp-sites
adep: snpeff

genetic variant annotation and effect prediction toolbox - tool
adep: vt

toolset for short variant discovery in genetic sequence data

Quellcode-Depot des Debian-Pakets (VCS: Git): https://salsa.debian.org/med-team/snippy.git
Quellcode-Depot des Debian-Pakets (browsable): https://salsa.debian.org/med-team/snippy