Quellcode-Paket: trinityrnaseq (2.11.0+dfsg-6)
Links für trinityrnaseq
Debian-Ressourcen:
Betreuer:
Externe Ressourcen:
Die folgenden Binärpakete werden aus diesem Quellcode-Paket gebaut:
- trinityrnaseq
- RNA-Seq De novo Assembly
- trinityrnaseq-examples
- RNA-Seq De novo Assembly common example and testing files
Andere Pakete mit Bezug zu trinityrnaseq
-
- adep:
debhelper-compat
(= 13)
- Paket nicht verfügbar
-
- adep:
jellyfish
- Zählt k-mere in DNA-Sequenzen
-
- adep:
libjung-free-java
- Java Universal Network/Graph Framework
-
- adep:
javahelper
- Helper scripts for packaging Java programs
-
- adep:
libgetopt-java
- GNU getopt - Java-Portierung
-
- adep:
default-jdk
- Standard-Java oder Java-kompatibles Development Kit
-
- adep:
parafly
- parallel command processing using OpenMP
-
- adep:
libjs-jquery
- JavaScript-Bibliothek für dynamische Webanwendungen
-
- adep:
jaligner
- Smith-Waterman algorithm with Gotoh's improvement
-
- adep:
libhts-dev
- C-Bibliothek für Hochdurchsatz-Sequenzierungsdatenformate - Entwicklungsdateien
-
- adep:
bowtie2
- Ultraschnelles und speichersparendes Alignmentprogramm für kurze DNA-Sequenzen
-
- adep:
salmon
- wicked-fast transcript quantification from RNA-seq data
-
- adep:
zlib1g-dev
- Kompressionsbibliothek - Entwicklung
-
- adep:
cmake
- Plattformübergreifendes, quelloffenes Make-System
-
- adep:
r-bioc-edger
- Empirische Analyse von digitalen Genexpressionsdaten mit R
-
- adep:
r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
-
- adep:
r-bioc-rots
- GNU R Teproducibility-Optimized Test Statistic
-
- adep:
r-cran-fastcluster
- Fast hierarchical clustering routines for GNU R
-
- adep:
liburi-perl
- Modul für Zugriff auf und Manipulation von URI-Zeichenketten
-
- adep:
r-cran-ape
- GNU R package for Analyses of Phylogenetics and Evolution
-
- adep:
r-bioc-ctc
- Cluster and Tree Conversion
-
- adep:
r-cran-gplots
- GNU R package with tools for plotting data by Greg Warnes et al
-
- adep:
r-cran-readr
- GNU R package to read rectangular text data
-
- adep:
r-bioc-biobase
- base functions for Bioconductor
-
- adep:
r-bioc-qvalue
- »GNU R«-Paket zur Q-Wert-Bestimmung für FDR-Steuerung
-
- adep:
r-bioc-goseq
- GNU R gene ontology analyser for RNA-seq and other length biased data
-
- adep:
r-bioc-tximport
- transcript-level estimates for biological sequencing
-
- adep:
python3-htseq
- Python3 high-throughput genome sequencing read analysis utilities
-
- adep:
rna-star
- ultrafast universal RNA-seq aligner
-
- adep:
picard-tools
- Kommandozeilenwerkzeuge zur Bearbeitung von SAM- und BAM-Dateien
-
- adep:
gmap
- spliced and SNP-tolerant alignment for mRNA and short reads
-
- adep:
hisat2
- graph-based alignment of short nucleotide reads to many genomes
-
- adep:
subread
- toolkit for processing next-gen sequencing data
-
- adep:
kallisto
- near-optimal RNA-Seq quantification
-
- adep:
python3-hisat2
- Python scripts accompanying hisat2
-
- adep:
r-cran-argparse
- GNU R command line parser for optional and positional arguments
-
- adep:
r-bioc-dexseq
- GNU R inference of differential exon usage in RNA-Seq
-
- adep:
tabix
- generic indexer for TAB-delimited genome position files
