Paket: libvcflib-tools (1.0.3+dfsg-2) [debports]

[ Quellcode:  ]

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Andere Pakete mit Bezug zu libvcflib-tools

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• dep: libc6 (>= 2.34)

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• dep: libdisorder0 (>= 0.0.2)

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• dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

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• dep: libgcc-s1 (>= 3.4)

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• dep: libgomp1 (>= 4.2.1)

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• dep: libhts3 (>= 1.10)

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• dep: liblzma5 (>= 5.1.1alpha+20110809)

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• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libssw0 (>= 1.1)

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• dep: libstdc++6 (>= 11)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libvcflib1 (>= 1.0.3+dfsg)

  C++ library for parsing and manipulating VCF files

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: r-base-core

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• dep: r-cran-ggplot2

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• dep: r-cran-gridbase

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• dep: r-cran-plyr

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• sug: r-cran-pracma

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