Paket: r-bioc-decontam (1.24.0+dfsg-1)

[ Quellcode: r-bioc-decontam  ]

identify contaminants in marker-gene and metagenomics sequencing sata

Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.

Andere Pakete mit Bezug zu r-bioc-decontam

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.19

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-cran-ggplot2 (>= 2.1.0)

  Implementierung der »Grammar of Graphics«

• dep: r-cran-reshape2 (>= 1.4.1)

  Flexibly reshape data: a reboot of the reshape package

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-phyloseq

  GNU R handling and analysis of high-throughput microbiome census data

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

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Architektur	Paketgröße	Größe (installiert)	Dateien
all	205,8 kB	285,0 kB	[Liste der Dateien]