Paket: skewer (0.2.2-6) [debports]

[ Quellcode:  ]

post-processing of high-throughput DNA sequence reads

skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.

Features

 * Detection and removal of adapter sequences
 * Insertion and deletion allowed in pattern matching
 * Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
 * Demultiplexing of barcoded sequencing runs
 * Multi-threading support
 * Trimming based on phred quality scores
 * IUPAC characters for barcodes and adapters
 * Compressed input and output support

Andere Pakete mit Bezug zu skewer

• dep: libc6 (>= 2.17)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC Support-Bibliothek

• dep: libstdc++6 (>= 11)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

skewer herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
ppc64 (inoffizielle Portierung)	83,7 kB	235,0 kB	[Liste der Dateien]