Paket: r-bioc-grohmm (1.40.3-2) [debports]

[ Quellcode:  ]

GRO-seq Analysis Pipeline

This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).

The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.

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r-bioc-grohmm herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
ppc64 (inoffizielle Portierung)	4.354,0 kB	4.594,0 kB	[Liste der Dateien]