Paket: libssw0 (1.1-15 und andere) [debports]

[ Quellcode:  ]

fast SIMD parallelized implementation of the Smith-Waterman algorithm

SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. The library can do protein and genome alignment directly. Current version of this implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.

Andere Pakete mit Bezug zu libssw0

• dep: libc6 (>= 2.4)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.3.1)

  GCC Support-Bibliothek

• dep: libstdc++6 (>= 11)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: zlib1g

  Kompressions-Bibliothek - Laufzeit

libssw0 herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
ppc64 (inoffizielle Portierung)	1.1-15+b2	25,2 kB	84,0 kB	[Liste der Dateien]