Paket: miniasm (0.3+dfsg-4) [debports]

[ Quellcode:  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Andere Pakete mit Bezug zu miniasm

• dep: libc6 (>= 2.34)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

miniasm herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
m68k (inoffizielle Portierung)	25,9 kB	66,0 kB	[Liste der Dateien]