Paket: readucks (0.0.3-5)

[ Quellcode: readucks  ]

Nanopore read de-multiplexer (read demux -> readux -> readucks, innit)

This package is inspired by the demultiplexing options in porechop but without the adapter trimming options - it just demuxes. It uses the parasail library with its Python bindings to do pairwise alignment which provides a considerable speed up over the seqan library used by porechop due to its low-level use of vector processor instructions.

Andere Pakete mit Bezug zu readucks

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python-3-Bibliothek für die Bioinformatik

• dep: python3-parasail

  Python3 bindings for the parasail C library

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Architektur	Paketgröße	Größe (installiert)	Dateien
all	20,1 kB	106,0 kB	[Liste der Dateien]