Paket: r-bioc-scater (1.32.1+ds-1)

[ Quellcode: r-bioc-scater  ]

Single-Cell Analysis Toolkit for Gene Expression Data in R

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.

Andere Pakete mit Bezug zu r-bioc-scater

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.19

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-bioc-beachmat (>= 2.20.0)

  I/O for several formats storing matrix data

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-biocneighbors (>= 1.22.0)

  Nearest Neighbor Detection for Bioconductor Packages

• dep: r-bioc-biocparallel (>= 1.38.0)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biocsingular (>= 1.20.0)

  Singular Value Decomposition for Bioconductor Packages

• dep: r-bioc-delayedarray (>= 0.30.1)

  BioConductor delayed operations on array-like objects

• dep: r-bioc-matrixgenerics (>= 1.16.0)

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-scuttle (>= 1.14.0)

  BioConductor single-cell RNA-Seq analysis utilities

• dep: r-bioc-singlecellexperiment (>= 1.26.0)

  S4 Classes for Single Cell Data

• dep: r-bioc-summarizedexperiment (>= 1.34.0)

  BioConductor assay container

• dep: r-cran-ggbeeswarm

  GNU R categorical scatter (violin point) plots

• dep: r-cran-ggplot2

  Implementierung der »Grammar of Graphics«

• dep: r-cran-ggrastr

  Bioconductor rasterize layers for 'ggplot2'

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-matrix

  GNU R - Paket von Klassen für dicht und dünn besetzte Matrizen

• dep: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcppml

  GNU R Rcpp Machine Learning Library

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-rtsne

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• dep: r-cran-uwot

  GNU R uniform manifold approximation and projection (UMAP)

• dep: r-cran-viridis

  GNU R package for color maps from matplotlib

• sug: r-bioc-biobase (>= 2.64.0)

  base functions for Bioconductor

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart (>= 2.60.1)

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-densvis (>= 1.14.0)

  density-preserving data visualization via non-linear dimensionality reduction

• sug: r-bioc-scrnaseq (>= 2.18.0)

  Collection of Public Single-Cell RNA-Seq Datasets

• sug: r-cran-cowplot

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

• sug: r-cran-robustbase

  GNU R package providing basic robust statistics

• sug: r-cran-scattermore

  GNU R scatterplots with more points

• sug: r-cran-testthat

  GNU R testsuite

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