Paket: stringtie (2.2.1+ds-3 und andere)
Links für stringtie
Debian-Ressourcen:
Quellcode-Paket stringtie herunterladen:
- [stringtie_2.2.1+ds-3.dsc]
- [stringtie_2.2.1+ds.orig-debian-tests-data.tar.xz]
- [stringtie_2.2.1+ds.orig.tar.xz]
- [stringtie_2.2.1+ds-3.debian.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [ccb.jhu.edu]
Ähnliche Pakete:
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
Andere Pakete mit Bezug zu stringtie
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- dep: libc6 (>= 2.34)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libgcc-s1 (>= 3.4)
- GCC Support-Bibliothek
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- dep: libhts3t64 (>= 1.17)
- C-Bibliothek für Hochdurchsatz-Sequenzierungsdatenformate
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- dep: libstdc++6 (>= 4.1.1)
- GNU-Implementierung der Standard-C++-Bibliothek (Version 3)
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- rec: stringtie-examples
- Paket nicht verfügbar
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- sug: cufflinks
- Transcript assembly, differential expression and regulation for RNA-Seq
stringtie herunterladen
Architektur | Version | Paketgröße | Größe (installiert) | Dateien |
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i386 | 2.2.1+ds-3+b1 | 433,3 kB | 1.284,0 kB | [Liste der Dateien] |