Paket: stringtie (2.2.1+ds-3 und andere)

[ Quellcode: stringtie  ]

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

Andere Pakete mit Bezug zu stringtie

• dep: libc6 (>= 2.34)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC Support-Bibliothek

• dep: libhts3t64 (>= 1.17)

  C-Bibliothek für Hochdurchsatz-Sequenzierungsdatenformate

• dep: libstdc++6 (>= 4.1.1)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: stringtie-examples

  Paket nicht verfügbar

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

stringtie herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
i386	2.2.1+ds-3+b1	433,3 kB	1.284,0 kB	[Liste der Dateien]