Paket: murasaki-mpi (1.68.6-13 und andere)

[ Quellcode: murasaki  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Andere Pakete mit Bezug zu murasaki-mpi

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  Dateisystemoperationen (portable Pfade, Iterationen über Verzeichnisse, usw.) in C++

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams-Bibliothek

• dep: libc6 (>= 2.34)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC Support-Bibliothek

• dep: libopenmpi3t64 (>= 4.1.6)

  Leistungsstarke Message-Passing-Bibliothek - Laufzeitbibliotheken

• dep: libstdc++6 (>= 13.1)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

murasaki-mpi herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
i386	1.68.6-13+b5	737,6 kB	4.803,0 kB	[Liste der Dateien]