Alle Optionen
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Quellcode: maffilter  ]

Paket: maffilter (1.3.1+dfsg-6)

Links für maffilter

Screenshot

Debian-Ressourcen:

Quellcode-Paket maffilter herunterladen:

Betreuer:

Externe Ressourcen:

Ähnliche Pakete:

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Andere Pakete mit Bezug zu maffilter

  • hängt ab von
  • empfiehlt
  • schlägt vor
  • erweitert

maffilter herunterladen

Download für alle verfügbaren Architekturen
Architektur Paketgröße Größe (installiert) Dateien
i386 266,2 kB1.271,0 kB [Liste der Dateien]