Paket: maffilter (1.3.1+dfsg-6)

[ Quellcode: maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Andere Pakete mit Bezug zu maffilter

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams-Bibliothek

• dep: libbpp-core4t64 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl-omics3t64 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12t64 (>= 2.4.1)

  Bio++ Phylogenetic library

• dep: libbpp-seq-omics3t64 (>= 2.4.1)

  Bio++ Sequence library: genomics components

• dep: libbpp-seq12t64 (>= 2.4.1)

  Bio++ Sequence library

• dep: libc6 (>= 2.34)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC Support-Bibliothek

• dep: libstdc++6 (>= 13.1)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

maffilter herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
i386	266,2 kB	1.271,0 kB	[Liste der Dateien]