Paket: r-bioc-tximeta (1.22.1+dfsg-1)

[ Quellcode: r-bioc-tximeta  ]

Transcript Quantification Import with Automatic Metadata

Transcript quantification import from Salmon and alevin with automatic attachment of transcript ranges and release information, and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.

Andere Pakete mit Bezug zu r-bioc-tximeta

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.19

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.66.0)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-annotationhub (>= 3.12.0)

  GNU R client to access AnnotationHub resources

• dep: r-bioc-biocfilecache (>= 2.12.0)

  GNU R management of files across sessions

• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-ensembldb (>= 2.28.0)

  GNU R utilities to create and use an Ensembl based annotation database

• dep: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicfeatures (>= 1.56.0)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.34.0)

  BioConductor assay container

• dep: r-bioc-txdbmaker

  Tools for making TxDb objects from genomic annotations

• dep: r-bioc-tximport (>= 1.32.0)

  transcript-level estimates for biological sequencing

• dep: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• dep: r-cran-matrix

  GNU R - Paket von Klassen für dicht und dünn besetzte Matrizen

• dep: r-cran-tibble

  GNU R Simple Data Frames

• sug: r-bioc-deseq2 (>= 1.44.0)

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-edger (>= 4.2.0)

  Empirische Analyse von digitalen Genexpressionsdaten mit R

• sug: r-bioc-fishpond (>= 2.10.0)

  Differential transcript and gene expression with inferential replicates

• sug: r-bioc-limma (>= 3.60.3)

  linear models for microarray data

• sug: r-bioc-tximportdata (>= 1.32.0)

  GNU R various transcript abundance quantifiers

• sug: r-cran-devtools

  Tools to Make Developing R Packages Easier

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

• sug: r-cran-testthat

  GNU R testsuite

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