Paket: prokka (1.14.6+dfsg-6)

[ Quellcode: prokka  ]

rapid annotation of prokaryotic genomes

A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.

Andere Pakete mit Bezug zu prokka

• dep: aragorn

  tRNA- und tmRNA-Nachweis in Nukleotidsequenzen

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: hmmer

  Profil-Hidden-Markov-Modelle für Protein-Sequenzanalyse

• dep: infernal

  Rückschluss auf Alignments der RNA-Sekundärstruktur

• dep: less

  Pagerprogramm ähnlich zu more

• dep: libbio-perl-perl

  Grundlegende Perl-Module von BioPerl

• dep: libbio-searchio-hmmer-perl

  perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)

• dep: libswiss-perl

  Perl API to the UniProt database

• dep: libxml-simple-perl

  Perl-Modul für das Lesen und Schreiben von XML

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: ncbi-tools-bin

  NCBI libraries for biology applications (text-based utilities)

• dep: parallel

  build and execute command lines from standard input in parallel

• dep: perl

  Larry Wall's Practical Extraction und Report Language

• dep: prodigal

  Microbial (bacterial and archaeal) gene finding program

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Architektur	Paketgröße	Größe (installiert)	Dateien
all	14.855,6 kB	106.501,0 kB	[Liste der Dateien]