Paket: libvcflib-tools (1.0.9+dfsg1-3 und andere)

[ Quellcode: libvcflib  ]

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Andere Pakete mit Bezug zu libvcflib-tools

• dep: libc6 (>= 2.38)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

  library for indexing and sequence extraction from FASTA files (lib)

• dep: libgcc-s1 (>= 3.3.1)

  GCC Support-Bibliothek

• dep: libgomp1 (>= 4.2.1)

  Unterstützungsbibliothek für GCC OpenMP (GOMP)

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 13.1)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: libtabixpp0t64 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libvcflib2 (>= 1.0.9+dfsg1)

  C++ library for parsing and manipulating VCF files

• dep: libwfa2-0 (>= 2.3.3)

  exact gap-affine algorithm (shared library)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: r-base-core

  GNU R - System für statistische Berechnungen und Grafik - Kern

• dep: r-cran-ggplot2

  Implementierung der »Grammar of Graphics«

• dep: r-cran-gridbase

  GNU R Integration of base and grid graphics

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• sug: r-cran-pracma

  practical numerical math functions for GNU R

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Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	1.0.9+dfsg1-3+b2	645,0 kB	3.846,0 kB	[Liste der Dateien]