Paket: bitseq (0.7.5+dfsg-6) [debports]

[ Quellcode:  ]

Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.

Andere Pakete mit Bezug zu bitseq

• dep: libc6.1 (>= 2.29)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6.1-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC Support-Bibliothek

• dep: libgomp1 (>= 6)

  Unterstützungsbibliothek für GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 11.2.0-3)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: zlib1g (>= 1:1.2.3.3)

  Kompressions-Bibliothek - Laufzeit

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

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Architektur	Paketgröße	Größe (installiert)	Dateien
alpha (inoffizielle Portierung)	363,8 kB	2.250,0 kB	[Liste der Dateien]