Paket: python-pbalign (0.3.2-1)

[ Quellcode: pbalign  ]

map Pacific Biosciences reads to reference DNA sequences (Python2)

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

pbalign is part of the SMRTAnalysis suite. This package provides the Python library backend.

Andere Pakete mit Bezug zu python-pbalign

• dep: blasr (>= 5.3+0)

  mapping single-molecule sequencing reads

• dep: python

  Interaktive objektorientierte Hochsprache (Python2-Version)

• dep: python-pbcommand

  common command-line interface for Pacific Biosciences analysis modules

• dep: python-pbcore

  Python 2 library for processing PacBio data files

• dep: python-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 2)

• rec: hdf5-tools

  Hierarchisches Datenformat 5 (HDF5) - Laufzeitprogramme

• rec: python-pbh5tools

  tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library

• sug: bowtie2

  Ultraschnelles und speichersparendes Alignmentprogramm für kurze DNA-Sequenzen

• sug: gmap

  spliced and SNP-tolerant alignment for mRNA and short reads

• sug: pbalign-doc

  documentation for pbalign

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