Paket: poa (2.0+20060928-7)

[ Quellcode: poa  ]

Partial Order Alignment for multiple sequence alignment

POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW.

Markierungen: Feld: Biologie, Bioinformatik, Implementiert in: implemented-in::c, interface::commandline, Rolle: Programm, Zweck: scope::utility, works-with-format::plaintext, Arbeitet mit: Benötige eine zusätzliche Markierung

Andere Pakete mit Bezug zu poa

• dep: libc6 (>= 2.14)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• sug: blast2

  transitional dummy package to ncbi-blast+-legacy

• enh: t-coffee

  Multiple Sequence Alignment

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Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	51,7 kB	140,0 kB	[Liste der Dateien]