Paket: salmon (1.4.0+ds1-1 und andere)

[ Quellcode: salmon  ]

wicked-fast transcript quantification from RNA-seq data

Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many different pipelines. For example, you can choose to make use of the lightweight alignments by providing Salmon with raw sequencing reads, or, if it is more convenient, you can provide Salmon with regular alignments (e.g. computed with your favorite aligner), and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances for your experiment.

Andere Pakete mit Bezug zu salmon

• dep: libboost-filesystem1.74.0 (>= 1.74.0)

  Dateisystemoperationen (portable Pfade, Iterationen über Verzeichnisse, usw.) in C++

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams-Bibliothek

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  C++-Bibliothek für Programmoptionen

• dep: libc6 (>= 2.29)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.4) [amd64]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 4.5) [arm64]

• dep: libjemalloc2 (>= 5.0.0)

  Skalierbare, nebenläufige Mehrzweck-Implementierung von malloc(3)

• dep: libjs-sphinxdoc (>= 2.4.3-5~)

  JavaScript-Unterstützung für Sphinx-Dokumentation

• dep: libstaden-read14 (>= 1.14.12)

  Staden library for reading and writing DNA sequencing results

• dep: libstdc++6 (>= 9)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: libtbb2 (>= 2017~U7) [amd64]

  parallelism library for C++ - runtime files

  dep: libtbb2 (>= 2020.3) [arm64]

• dep: sphinx-rtd-theme-common (>= 0.5.1+dfsg)

  sphinx theme from readthedocs.org (common files)

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

salmon herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	1.4.0+ds1-1+b4	2.168,9 kB	8.433,0 kB	[Liste der Dateien]
arm64	1.4.0+ds1-1+b4	1.998,2 kB	7.121,0 kB	[Liste der Dateien]