Paket: metastudent (2.0.1-8)

[ Quellcode: metastudent  ]

predictor of Gene Ontology terms from protein sequence

Often, only the sequence of a protein is known, but not its functions. Metastudent will try to predict missing functional annotations through homology searches (BLAST).

All predicted functions correspond to Gene Ontology (GO) terms from the Molecular Function (MFO), the Biological Process (BPO) and the Cellular Component Ontology (CCO) and are associated with a reliability score.

Andere Pakete mit Bezug zu metastudent

• dep: default-jre

  Standard-Java- oder Java-kompatible Laufzeitumgebung

• dep: libfile-chdir-perl

  Sinnvollere Weise des Verzeichniswechsels

• dep: libgo-perl (>= 0.15-3)

  perl modules for GO and other OBO ontologies

• dep: libgraphviz-perl

  Perl interface to the GraphViz graphing tool

• dep: libipc-run-perl

  Perl-Modul für laufende Prozesse

• dep: metastudent-data (>= 2.0.0)

  predictor of Gene Ontology terms from protein sequence - data files

• dep: ncbi-blast+-legacy

  NCBI Blast legacy call script

• dep: perl

  Larry Wall's Practical Extraction und Report Language

• dep: python3

  Interaktive objektorientierte Hochsprache (Python3-Standardversion)

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Architektur	Paketgröße	Größe (installiert)	Dateien
all	5.850,2 kB	94.970,0 kB	[Liste der Dateien]