Paket: bandage (0.8.1-4)

[ Quellcode: bandage  ]

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.

De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.

More information and download links are on the Bandage website: rrwick.github.io/Bandage

The package is relevant to the field of genome assembly.

Markierungen: GUI-Baukasten: Qt

Andere Pakete mit Bezug zu bandage

• dep: libc6 (>= 2.29)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC Support-Bibliothek

• dep: libqt5core5a (>= 5.14.1)

  Qt-5-Basismodul

• dep: libqt5gui5 (>= 5.8.0)

  Qt-5-GUI-Modul

  oder libqt5gui5-gles (>= 5.8.0)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt-5-Modul für skalierbare Vektorgrafiken (SVG)

• dep: libqt5widgets5 (>= 5.11.0~rc1)

  Qt-5-Widgetmodul

• dep: libstdc++6 (>= 5.2)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

bandage herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
mips64el	869,4 kB	2.661,0 kB	[Liste der Dateien]