Paket: python3-nanomath (1.2.0+ds-1)

[ Quellcode: python-nanomath  ]

simple math function for other Oxford Nanopore processing scripts

This Python3 module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data.

 * Calculate read N50 from a set of lengths get_N50(readlenghts)
 * Remove extreme length outliers from a dataset
   remove_length_outliers(dataframe, columname)
 * Calculate the average Phred quality of a read ave_qual(qualscores)
 * Write out the statistics report after calling readstats function
   write_stats(dataframe, outputname)
 * Compute a number of statistics, return a dictionary
   calc_read_stats(dataframe)

Andere Pakete mit Bezug zu python3-nanomath

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• dep: python3-numpy

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• dep: python3-pandas

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