Paket: fastqc (0.11.9+dfsg-4)

[ Quellcode: fastqc  ]

quality control for high throughput sequence data

FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.

The main functions of FastQC are

 * Import of data from BAM, SAM or FastQ files (any variant)
 * Providing a quick overview to tell you in which areas there may
   be problems
 * Summary graphs and tables to quickly assess your data
 * Export of results to an HTML based permanent report
 * Offline operation to allow automated generation of reports without
   running the interactive application

Markierungen: Benutzer-Schnittstellen: Graphical User Interface, X-Window-System, Rolle: Programm

Andere Pakete mit Bezug zu fastqc

• dep: default-jre

  Standard-Java- oder Java-kompatible Laufzeitumgebung

• dep: libcommons-math3-java

  Java lightweight mathematics and statistics components

• dep: libfindbin-libs-perl

  Perl module to use a relative path for lib directories

• dep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• dep: libjbzip2-java

  bzip2 compression/decompression library

• dep: libsis-jhdf5-java

  easy-to-use HDF library for Java

fastqc herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
all	380,6 kB	564,0 kB	[Liste der Dateien]