Paket: belvu (4.44.1+dfsg-6 und andere)

[ Quellcode: seqtools  ]

multiple sequence alignment viewer and phylogenetic tool

Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.

 * View multiple sequence alignments.
 * Residues can be coloured by conservation, with user-configurable
   cutoffs and colours.
 * Residues can be coloured by residue type (user-configurable).
 * Colour schemes can be imported or exported.
 * Swissprot (or PIR) entries can be fetched by double clicking.
 * The position in the alignment can be easily tracked.
 * Manual deletion of rows and columns.
 * Automatic editing of rows and columns based on customisable criteria:
    - removal of all-gap columns;
    - removal of all gaps;
    - removal of redundant sequences;
    - removal of a column by a user-specified percentage of gaps;
    - filtering of sequences by percent identity;
    - removal of sequences by a user-specified percentage of gaps;
    - removal of partial sequences (those starting or ending with
      gaps); and
    - removal of columns by conservation (with user-specified
      upper/lower cutoffs).
 * The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
 * Distance matrices between sequences can be generated using a variety
   of distance metrics.
 * Distance matrices can be imported or exported.
 * Phylogenetic trees can be constructed based on various distance-based
   tree reconstruction algorithms.
 * Trees can be saved in New Hampshire format.
 * Belvu can perform bootstrap phylogenetic reconstruction.

Markierungen: GUI-Baukasten: GTK

Andere Pakete mit Bezug zu belvu

• dep: libc6 (>= 2.29)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libcairo2 (>= 1.2.4)

  2D-Vektorgrafikbibliothek Cairo

• dep: libcurl4 (>= 7.16.2)

  Einfach nutzbare Client-Bibliothek für URL-Übertragungen (OpenSSL-Variante)

• dep: libgbtools0 (>= 4.44.1+dfsg)

  library for visualising sequence alignments

• dep: libglib2.0-0 (>= 2.22.0)

  GLib - Bibliothek von C-Routinen

• dep: libgtk2.0-0 (>= 2.12.0)

  GTK - Bibliothek für grafische Benutzeroberflächen - alte Version

• dep: libpango-1.0-0 (>= 1.14.0)

  Gestaltung und Anzeige internationalisierten Textes

• dep: libstdc++6 (>= 4.1.1)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

belvu herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
arm64	4.44.1+dfsg-6+b1	1.022,1 kB	1.231,0 kB	[Liste der Dateien]