Paket: pyensembl (2.2.4+ds-1)

[ Quellcode: pyensembl  ]

installs data from the Ensembl genome database

The Ensembl genome database is an established reference for genomic sequences and their automated annotation. To have this data local has advantages for bulk analyses, e.g. for the mapping of reads from RNA-seq against the latest golden path - or a previous one to compare analyses.

This package provides a reproducible way to insatll this data and thus simplify the automation of respective workflows.

Andere Pakete mit Bezug zu pyensembl

• dep: pylint

  Statisches Prüfprogramm für Python-3-Code und Generator von UML-Diagrammen

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-datacache

  helpers for transparently downloading datasets

• dep: python3-gtfparse

  parser for gene transfer format (aka GFF2)

• dep: python3-memoized-property

  decorator to avoid redundant computation

• dep: python3-nose

  test discovery and running for Python3 unittest

• dep: python3-serializable

  base class with serialization methods

• dep: python3-typechecks

  express constraints on types

pyensembl herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
all	34,2 kB	200,0 kB	[Liste der Dateien]