Paket: nanook (1.33+dfsg-5)

[ Quellcode: nanook  ]

pre- and post-alignment analysis of nanopore sequencing data

NanoOK is a flexible, multi-reference software for pre- and post- alignment analysis of nanopore sequencing data, quality and error profiles.

NanoOK (pronounced na-nook) is a tool for extraction, alignment and analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ files, align them (with a choice of alignment tools), then generate a comprehensive multi-page PDF report containing yield, accuracy and quality analysis. Along the way, it generates plain text files which can be used for further analysis, as well as graphs suitable for inclusion in presentations and papers.

Andere Pakete mit Bezug zu nanook

• dep: default-jre-headless

  Standard Java or Java compatible Runtime (headless)

• dep: hdf5-tools

  Hierarchisches Datenformat 5 (HDF5) - Laufzeitprogramme

• dep: last-align

  Vergleich biologischer Sequenzen für Genome

• dep: libcommons-io-java

  Häufig genutzte, nützliche E/A-Klassen

• dep: r-cran-ggplot2

  Implementierung der »Grammar of Graphics«

• dep: r-cran-gridextra

  GNU R: Erweiterungen für das grid-Paket

• dep: r-cran-reshape

  Flexibly reshape data

• dep: r-cran-scales

  Skalierungsfunktionen zur Visualisierung

• dep: texlive-latex-base

  TeX Live: LaTeX fundamental packages

• rec: blasr

  mapping single-molecule sequencing reads

• rec: bwa

  Burrows-Wheeler Aligner

• sug: default-jre

  Standard Java or Java compatible Runtime

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