Paket: python3-pyranges (0.0.111+ds-4)

[ Quellcode: pyranges  ]

2D representation of genomic intervals and their annotations

A PyRanges object must have the columns Chromosome, Start and End. These describe the genomic position and function as implicit row labels. A Strand column is optional and adds strand information to the intervals. Any other columns are allowed and are considered metadata.

The structure can be filled from .bed, .bam or .gff files, also from tabular or textual representations.

Andere Pakete mit Bezug zu python3-pyranges

• dep: cython3

  C-Erweiterungen für Python 3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-natsort

  Natural sorting for Python (Python3)

• dep: python3-ncls

  datastructure for interval overlap queries

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pyrle

  run length arithmetic in Python

• dep: python3-sorted-nearest

  Cython helper library for pyranges

• dep: python3-tabulate

  pretty-print tabular data in Python3

• sug: python-pyranges-doc

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