Paket: r-bioc-annotationhub (3.6.0+dfsg-1)

[ Quellcode: r-bioc-annotationhub  ]

GNU R client to access AnnotationHub resources

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Andere Pakete mit Bezug zu r-bioc-annotationhub

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.16

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R - System für statistische Berechnungen und Grafik - Kern

• dep: r-bioc-annotationdbi (>= 1.31.19)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biocfilecache (>= 1.5.1)

  GNU R management of files across sessions

• dep: r-bioc-biocgenerics (>= 0.15.10)

  generic functions for Bioconductor

• dep: r-bioc-biocversion

  set the appropriate version of Bioconductor packages

• dep: r-bioc-interactivedisplaybase

  base package for enabling powerful shiny web displays of Bioconductor objects

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-biocmanager

  access the Bioconductor project package repository

• dep: r-cran-curl

  Moderner und flexibler Web-Client für GNU R

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-rappdirs

  GNU R application directories

• dep: r-cran-rsqlite

  R-Datenbank-Schnittstellentreiber für SQLite

• dep: r-cran-yaml

  Methoden zum Konvertieren von R-Daten in YAML und zurück

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biostrings

  GNU R string objects representing biological sequences

• sug: r-bioc-experimenthub

  BioConductor client to access ExperimentHub resources

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-summarizedexperiment

  BioConductor assay container

• sug: r-bioc-variantannotation

  BioConductor annotation of genetic variants

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

• sug: r-cran-runit

  GNU-R-Paket, das ein Programmiergerüst für Komponententests bereitstellt

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