Paket: r-bioc-nanostringqcpro (1.30.0-1)

[ Quellcode: r-bioc-nanostringqcpro  ]

processing and QA for NanoString mRNA expression data

NanoStringQCPro provides a set of quality metrics that can be used to assess the quality of NanoString mRNA gene expression data -- i.e. to identify outlier probes and outlier samples. It also provides different background subtraction and normalization approaches for this data. It outputs suggestions for flagging samples/probes and an easily sharable html quality control output.

Andere Pakete mit Bezug zu r-bioc-nanostringqcpro

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.16

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R - System für statistische Berechnungen und Grafik - Kern

• dep: r-bioc-annotationdbi (>= 1.26.0)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase (>= 2.24.0)

  base functions for Bioconductor

• dep: r-bioc-org.hs.eg.db (>= 2.14.0)

  genome-wide annotation for Human

• dep: r-cran-knitr (>= 1.12)

  GNU R package for dynamic report generation using Literate Programming

• dep: r-cran-nmf (>= 0.20.5)

  GNU-R-Rahmenwerk zur Faktorisierung nicht-negativer Matrizen

• dep: r-cran-png (>= 0.1-7)

  GNU R package to read and write PNG images

• dep: r-cran-rcolorbrewer (>= 1.0-5)

  GNU R package providing suitable color palettes

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

• sug: r-cran-roxygen2 (>= 4.0.1)

  in-line documentation for GNU R

• sug: r-cran-testthat

  GNU R testsuite

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