Paket: r-bioc-drimseq (1.26.0-1)

[ Quellcode: r-bioc-drimseq  ]

Differential transcript usage and tuQTL analyses with

Dirichlet-multinomial model in RNA-seq The package provides two frameworks. One for the differential transcript usage analysis between different conditions and one for the tuQTL analysis. Both are based on modeling the counts of genomic features (i.e., transcripts) with the Dirichlet-multinomial distribution. The package also makes available functions for visualization and exploration of the data and results.

Andere Pakete mit Bezug zu r-bioc-drimseq

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.16

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R - System für statistische Berechnungen und Grafik - Kern

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-edger

  Empirische Analyse von digitalen Genexpressionsdaten mit R

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-limma

  linear models for microarray data

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-ggplot2

  Implementierung der »Grammar of Graphics«

• dep: r-cran-mass

  GNU-R-Paket für MASS von Venables und Ripley

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• rec: r-cran-testthat

  GNU R testsuite

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

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