Paket: r-bioc-degreport (1.34.0+dfsg-1)

[ Quellcode: r-bioc-degreport  ]

BioConductor report of DEG analysis

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

Andere Pakete mit Bezug zu r-bioc-degreport

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.16

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

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• dep: r-bioc-biobase

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• dep: r-bioc-biocgenerics

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• dep: r-bioc-complexheatmap

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• dep: r-bioc-consensusclusterplus

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• dep: r-bioc-deseq2

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• dep: r-bioc-edger

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• dep: r-bioc-s4vectors

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• dep: r-bioc-summarizedexperiment

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• dep: r-cran-broom

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• dep: r-cran-circlize

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• dep: r-cran-cowplot

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• dep: r-cran-dplyr

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• dep: r-cran-ggdendro

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• dep: r-cran-ggplot2

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• dep: r-cran-ggrepel

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• dep: r-cran-knitr

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• dep: r-cran-logging

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• dep: r-cran-magrittr

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• dep: r-cran-psych

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• dep: r-cran-rcolorbrewer

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• dep: r-cran-reshape

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• dep: r-cran-rlang

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• dep: r-cran-scales

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• dep: r-cran-stringr

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• dep: r-cran-tibble

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• dep: r-cran-tidyr

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• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-limma

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• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rmarkdown

  Konvertierung von R-Markdown-Dokumenten in verschiedene Formate

• sug: r-cran-statmod

  GNU R package providing algorithms and functions for statistical modeling

• sug: r-cran-testthat

  GNU R testsuite

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