Paket: r-bioc-limma (3.54.1+dfsg-1)

[ Quellcode: r-bioc-limma  ]

linear models for microarray data

Microarrays are microscopic plates with carefully arranged short DNA strands and/or chemically prepared surfaces to which other DNA preferably binds. The amount of DNA binding at different locations of these chips, typically determined by a fluorescent dye, is to be interpreted. The technology is typically used with DNA that is derived from RNA, i.e to determine the activity of a gene and/or its splice variants. But the technology is also used to determine sequence variations in genomic DNA.

This Bioconductor package supports the analysis of gene expression microarray data, especially the use of linear models for analysing designed experiments and the assessment of differential expression. The package includes pre-processing capabilities for two-colour spotted arrays. The differential expression methods apply to all array platforms and treat Affymetrix, single channel and two channel experiments in a unified way.

Markierungen: Biologie: Nukleinsäuren, Feld: Biologie, field::biology:bioinformatics, implemented-in::r, Benutzer-Schnittstellen: Kommandozeile, Rolle: Programm

Andere Pakete mit Bezug zu r-bioc-limma

• dep: libc6 (>= 2.17)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.16

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2)

  GNU R - System für statistische Berechnungen und Grafik - Kern

• sug: r-bioc-affy

  BioConductor methods for Affymetrix Oligonucleotide Arrays

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-go.db

  annotation maps describing the entire Gene Ontology

• sug: r-bioc-org.hs.eg.db

  genome-wide annotation for Human

• sug: r-cran-biasedurn

  GNU R Biased Urn model distributions

• sug: r-cran-ellipse

  GNU R functions for drawing ellipses and ellipse-like confidence regions

• sug: r-cran-gplots

  GNU R package with tools for plotting data by Greg Warnes et al

• sug: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• sug: r-cran-mass

  GNU-R-Paket für MASS von Venables und Ripley

• sug: r-cran-statmod (>= 1.2.2)

  GNU R package providing algorithms and functions for statistical modeling

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