Package: megadepth (1.2.0-4 and others)

[ Source: megadepth  ]

computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

Other Packages Related to megadepth

• dep: libbigwig0t64 (>= 0.4.6)

  C-bibliotek til at håndtere bigWig-filer

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delte biblioteker
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC støttebibliotek

• dep: libhts3t64 (>= 1.17)

  C-bibliotek for høj-gennemløb sekvensdataformater

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ bibliotek v3

• sug: r-bioc-megadepth

  BioCOnductor BigWig og BAM-relaterede redskaber

Download megadepth

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.2.0-4+b1	81.0 kB	275.0 kB	[list of files]