Package: vdjtools (1.2.1+git20190311+repack-1) [non-free]

[ Source: vdjtools  ]

framework for post-analysis of B/T cell repertoires

VDJtools is an open-source Java/Groovy-based framework designed to facilitate analysis of immune repertoire sequencing (RepSeq) data. VDJtools computes a wide set of statistics and is able to perform various forms of cross-sample analysis. Both comprehensive tabular output and publication-ready plots are provided.

The main aims of the VDJtools Project are:

 * To ensure consistency between post-analysis methods and results
 * To save the time of bioinformaticians analyzing RepSeq data
 * To create an API framework facilitating development of new RepSeq
   analysis applications
 * To provide a simple enough command line tool so it could be used by
   immunologists and biologists with little computational background

Other Packages Related to vdjtools

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libvdjtools-java

  Java library of vdjtools

• rec: r-cran-ape

  GNU R-pakke for Analyses of Phylogenetics and Evolution

• rec: r-cran-circlize

  Circular Visualization

• rec: r-cran-ffield

  Kraftfeltsimulering for et sæt af punkter

• rec: r-cran-ggplot2

  Implementering af Grammar of Graphics

• rec: r-cran-gplots

  GNU R-pakke med værktøjer for plot af data af Greg Warnes m.fl.

• rec: r-cran-gridbase

  GNU R-integration af base- og gittergrafik

• rec: r-cran-gridextra

  GNU R-pakke med udvidelser for pakken grid

• rec: r-cran-mass

  GNU R-pakke med Venables og Ripleys MASS

• rec: r-cran-plotrix

  GNU R package providing various plotting functions

• rec: r-cran-rcolorbrewer

  GNU R-pakke der tilbyder egnede farvepaletter

• rec: r-cran-reshape

  Flexibly reshape data

• rec: r-cran-reshape2

  Fleksibelt omdanne data - en genstart af pakken reshape

• rec: r-cran-scales

  Skaler funktioner for visualisering

• rec: r-cran-venndiagram

  Opret højopløsnings Venn- og Euler-plot

Download vdjtools

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Architecture	Package Size	Installed Size	Files
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