Package: fasttree (2.1.10-2)
Links for fasttree
Debian Resources:
Download Source Package fasttree:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Steffen Moeller (QA Page)
- Thorsten Alteholz (QA Page)
- Andreas Tille (QA Page)
- Roland Fehrenbacher (QA Page)
External Resources:
- Homepage [www.microbesonline.org]
Similar packages:
phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.
FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").
This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).
Other Packages Related to fasttree
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- dep: libc6 (>= 2.7)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
Download fasttree
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| i386 | 172.6 kB | 501.0 kB | [list of files] |