Package: trnascan-se (2.0.7+ds-1) [non-free]

[ Source: trnascan-se  ]

detection of transfer RNA genes in genomic sequence

tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.

Other Packages Related to trnascan-se

• dep: infernal

  inference of RNA secondary structural alignments

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: trnascan-se-common (= 2.0.7+ds-1)

  detection of transfer RNA genes in genomic sequence (common files)

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Architecture	Package Size	Installed Size	Files
amd64	154.5 kB	719.0 kB	[list of files]