Package: python3-biopython (1.80+dfsg-4 and others)

[ Source: python-biopython  ]

Python3 library for bioinformatics

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

It is a distributed collaborative effort to develop Python3 libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project.

Other Packages Related to python3-biopython

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-numpy (>= 1:1.22.0)

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• dep: python3-numpy-abi9

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• dep: python3-renderpm

  python low level render interface

• dep: python3-reportlab

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• dep: w3c-sgml-lib

  w3.org DTD and catalog files

• rec: ncbi-blast+ (>= 2.10.1-3)

  next generation suite of BLAST sequence search tools

• rec: python-biopython-doc (= 1.80+dfsg-4)

  Documentation for the Biopython library

• sug: bwa

  Burrows-Wheeler Aligner

• sug: clustalo

  General-purpose multiple sequence alignment program for proteins

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: dialign

  Segment-based multiple sequence alignment

• sug: dssp (>= 4.0.0)

  protein secondary structure assignment based on 3D structure

• sug: emboss

  European molecular biology open software suite

• sug: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: muscle3

  multiple alignment program of protein sequences

• sug: phylip

  package of programs for inferring phylogenies

• sug: phyml

  Phylogenetic estimation using Maximum Likelihood

• sug: prank

  Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

• sug: probcons

  PROBabilistic CONSistency-based multiple sequence alignment

• sug: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• sug: python3-mmtf

  binary encoding of biological structures (Python 3)

• sug: python3-mysqldb

  Python interface to MySQL

• sug: python3-pil

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• sug: python3-psycopg2

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• sug: python3-rdflib

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• sug: python3-scipy

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• sug: python3-tk

  Tkinter - Writing Tk applications with Python 3.x

• sug: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• sug: t-coffee

  Multiple Sequence Alignment

• sug: wise

  comparison of biopolymers, like DNA and protein sequences

Download python3-biopython

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.80+dfsg-4+b1	1,555.9 kB	11,325.0 kB	[list of files]
arm64	1.80+dfsg-4+b1	1,543.0 kB	11,686.0 kB	[list of files]
armel	1.80+dfsg-4+b1	1,542.3 kB	11,276.0 kB	[list of files]
armhf	1.80+dfsg-4+b1	1,531.6 kB	11,168.0 kB	[list of files]
i386	1.80+dfsg-4+b1	1,551.5 kB	11,320.0 kB	[list of files]
mips64el	1.80+dfsg-4+b1	1,544.9 kB	11,760.0 kB	[list of files]
mipsel	1.80+dfsg-4+b1	1,544.9 kB	11,751.0 kB	[list of files]
ppc64el	1.80+dfsg-4+b1	1,568.0 kB	11,752.0 kB	[list of files]
s390x	1.80+dfsg-4+b1	1,545.0 kB	11,294.0 kB	[list of files]